Publications

2018

• Optimization of dispersive coefficients in the homogenization of the wave equation in periodic structures
  
  • Allaire Grégoire
  • Yamada T
  Numerische Mathematik, Springer Verlag, 2018, 140 (2), pp.265-326. We study dispersive effects of wave propagation in periodic media, which can be modelled by adding a fourth-order term in the homogenized equation. The corresponding fourth-order dispersive tensor is called Burnett tensor and we numerically optimize its values in order to minimize or maximize dispersion. More precisely, we consider the case of a two-phase composite medium with an 8-fold symmetry assumption of the periodicity cell in two space dimensions. We obtain upper and lower bound for the dispersive properties, along with optimal microgeometries.
• Study of new rare event simulation schemes and their application to extreme scenario generation
  
  • Agarwal Ankush
  • de Marco Stefano
  • Gobet Emmanuel
  • Liu Gang
  Mathematics and Computers in Simulation, Elsevier, 2018, 143, pp.89-98. This is a companion paper based on our previous work [ADGL15] on rare event simulation methods. In this paper, we provide an alternative proof for the ergodicity of shaking transformation in the Gaussian case and propose two variants of the existing methods with comparisons of numerical performance. In numerical tests, we also illustrate the idea of extreme scenario generation based on the convergence of marginal distributions of the underlying Markov chains and show the impact of the discretization of continuous time models on rare event probability estimation. (10.1016/j.matcom.2017.05.004)
  DOI : 10.1016/j.matcom.2017.05.004
• New interior transmission problem applied to a single Floquet–Bloch mode imaging of local perturbations in periodic media
  
  • Cakoni Fioralba
  • Haddar Houssem
  • Nguyen Thi-Phong
  Inverse Problems, IOP Publishing, 2018, 35 (1), pp.015009.
• Derivation of an ornstein-uhlenbeck process for a massive particle in a rarified gas of particles
  
  • Bodineau Thierry
  • Gallagher Isabelle
  • Saint-Raymond Laure
  Annales de l'Institut Henri Poincaré (A). Physique Theorique, Birkhäuser, 2018, 19 (6). We consider the statistical motion of a convex rigid body in a gas of N smaller (spherical) atoms close to thermodynamic equilibrium. Because the rigid body is much bigger and heavier, it undergoes a lot of collisions leading to small deflections. We prove that its velocity is described, in a suitable limit, by an Ornstein-Uhlenbeck process. The strategy of proof relies on Lanford's arguments [17] together with the pruning procedure from [3] to reach diffusive times, much larger than the mean free time. Furthermore, we need to introduce a modified dynamics to avoid pathological collisions of atoms with the rigid body: these collisions, due to the geometry of the rigid body, require developing a new type of trajectory analysis. (10.1007/s00023-018-0674-6)
  DOI : 10.1007/s00023-018-0674-6
• The Quasispecies for the Wright–Fisher Model
  
  • Cerf Raphaël
  • Dalmau Joseba
  Evolutionary Biology, Springer, 2018, 45 (3), pp.318-323. We consider the classical Wright-Fisher model of population genetics. We prove the existence of an error threshold for the mutation probability per nucleotide, below which a quasispecies is formed. We show a new phenomenon, specific to a finite population model, namely the existence of a population threshold: to ensure the stability of the quasispecies, the population size has to be at least of the same order as the genome length. We derive an explicit formula describing the quasispecies. (10.1007/s11692-018-9452-0)
  DOI : 10.1007/s11692-018-9452-0
• Commentaires sur le projet de document consensus de l’OCDE sur les considérations environnementales relatives à l’évaluation des risques associé. Paris, le 23 mai 2018
  
  • Comité Scientifique Du Haut Conseil Des Biotechnologies .
  • Angevin Frédérique
  • Bagnis Claude
  • Bar-Hen Avner
  • Barny Marie Anne M. A.
  • Bellivier Florence
  • Berny Philippe
  • Boireau Pascal
  • Brévault Thierry
  • Chauvel Bruno B.
  • Coléno François
  • Couvet Denis
  • Dassa Elie
  • Eychenne Nathalie
  • Franche Claudine
  • Guerche Philippe
  • Guillemain Joël
  • Hernandez Raquet Guillermina
  • Jestin André
  • Klonjkowski Bernard
  • Lavielle Marc
  • Le Corre Valérie V.
  • Lemaire Olivier O.
  • Lereclus Didier
  • Maximilien Rémi
  • Meurs Eliane
  • Moreau de Bellaing Cédric
  • Naffakh Nadia
  • Négre Didier
  • Noyer Jean-Louis
  • Ochatt Sergio
  • Pages Jean-Christophe
  • Parzy Daniel
  • Regnault-Roger Catherine
  • Renard Michel
  • Saindrenan Patrick
  • Simonet Pascal
  • Troadec Marie-Bérengère
  • Vaissière Bernard
  • de Verneuil Hubert
  • Vilotte Jean-Luc
  , 2018, pp.25 p.. Le Haut Conseil des biotechnologies (HCB) a été sollicité le 4 avril 2018 par la direction générale de l’alimentation du ministère de l’Agriculture et de l’Alimentation et par la direction générale de la prévention des risques du ministère de la Transition écologique et solidaire pour examiner et commenter le projet de document consensus de l’OCDE (version du 3 avril 2018) sur les considérations environnementales relatives à l’évaluation des risques associés à la dissémination de plantes génétiquement modifiées en vue de la réunion du groupe de travail de l’OCDE sur l’harmonisation de la surveillance réglementaire en biotechnologie les 21 et 22 juin 2018. Le Comité scientifique (CS)1 du HCB a examiné ce document en séance du 26 avril 2018 sous la présidence de Jean-Christophe Pagès. Les commentaires du CS du HCB à destination de l’OCDE, en version française et anglaise2, ont été validés par voie électronique et transmis aux autorités compétentes françaises le 23 mai 2018, et publiés après envoi à l’OCDE le 30 mai 2018.
• Impact of subsampling and tree depth on random forests
  
  • Duroux Roxane
  • Scornet Erwan
  ESAIM: Probability and Statistics, EDP Sciences, 2018, 22, pp.96-128. Random forests are ensemble learning methods introduced by Breiman [Mach. Learn. 45 (2001) 5–32] that operate by averaging several decision trees built on a randomly selected subspace of the data set. Despite their widespread use in practice, the respective roles of the different mechanisms at work in Breiman’s forests are not yet fully understood, neither is the tuning of the corresponding parameters. In this paper, we study the influence of two parameters, namely the subsampling rate and the tree depth, on Breiman’s forests performance. More precisely, we prove that quantile forests (a specific type of random forests) based on subsampling and quantile forests whose tree construction is terminated early have similar performances, as long as their respective parameters (subsampling rate and tree depth) are well chosen. Moreover, experiments show that a proper tuning of these parameters leads in most cases to an improvement of Breiman’s original forests in terms of mean squared error. (10.1051/ps/2018008)
  DOI : 10.1051/ps/2018008
• From Hammersley's lines to Hammersley's trees
  
  • Basdevant Anne-Laure
  • Gerin Lucas
  • Gouere Jean-Baptiste
  • Singh Arvind
  Probability Theory and Related Fields, Springer Verlag, 2018, 171 (1-2), pp.1-51. We construct a stationary random tree, embedded in the upper half plane, with prescribed offspring distribution and whose vertices are the atoms of a unit Poisson point process. This process which we call Hammersley's tree process extends the usual Hammersley's line process. Just as Hammersley's process is related to the problem of the longest increasing subsequence, this model also has a combinatorial interpretation: it counts the number of heaps (i.e. increasing trees) required to store a random permutation. This problem was initially considered by Byers et. al (2011) and Istrate and Bonchis (2015) in the case of regular trees. We show, in particular, that the number of heaps grows logarithmically with the size of the permutation. (10.1007/s00440-017-0772-2)
  DOI : 10.1007/s00440-017-0772-2
• Vertices with fixed outdegrees in large Galton-Watson trees
  
  • Thévenin Paul
  Electronic Journal of Probability, Institute of Mathematical Statistics (IMS), 2018, 25 (none). We are interested in nodes with fixed outdegrees in large conditioned Galton--Watson trees. We first study the scaling limits of processes coding the evolution of the number of such nodes in different explorations of the tree (lexicographical order and contour order) starting from the root. We give necessary and sufficient conditions for the limiting processes to be centered, thus measuring the linearity defect of the evolution of the number of nodes with fixed outdegrees. This extends results by Labarbe & Marckert in the case of the contour-ordered counting process of leaves in uniform plane trees. Then, we extend results obtained by Janson concerning the asymptotic normality of the number of nodes with fixed outdegrees. (10.1214/20-EJP465)
  DOI : 10.1214/20-EJP465
• Sensing Von Economo Neurons in the Insula with Multi-shell Diffusion MRI
  
  • Wassermann Demian
  • Nguyen Dang Van
  • Gallardo Guillermo
  • Li Jing-Rebecca
  • Cai Weidong
  • Menon Vinod
  , 2018.
• Markov chains
  
  • Douc Randal
  • Moulines Eric
  • Priouret Pierre
  • Soulier Philippe
  , 2018, pp.757. This book covers the classical theory of Markov chains on general state-spaces as well as many recent developments. The theoretical results are illustrated by simple examples, many of which are taken from Markov Chain Monte Carlo methods. The book is self-contained, while all the results are carefully and concisely proven. Bibliographical notes are added at the end of each chapter to provide an overview of the literature (10.1007/978-3-319-97704-1)
  DOI : 10.1007/978-3-319-97704-1
• Full Likelihood Inference from the Site Frequency Spectrum based on the Optimal Tree Resolution
  
  • Sainudiin Raazesh
  • Véber Amandine
  Theoretical Population Biology, Elsevier, 2018.
• Elasto-plastic shape optimization using the level set method
  
  • Maury Aymeric
  • Allaire Grégoire
  • Jouve François
  SIAM Journal on Control and Optimization, Society for Industrial and Applied Mathematics, 2018, 56 (1), pp.556-581. This article focused on shape optimization of static perfect plasticity problems in the framework of the Von Mises criterion, thanks to the level set method. We circumvent the ill-posedness of the model, by using two regularized versions of the mechanical problem. The rst one is the classical Perzyna formulation which we regularize, the second one is a new regularized formulation derived for the Von Mises criterion. Shape gradients are calculated thanks to the adjoint method. To illustrate the validity of the method, 2D examples are performed.
• Solutions for models of chemically reacting mixtures
  
  • Giovangigli Vincent
  , 2018. The mathematical modeling of chemically reacting mixtures is investigated. The governing equations, that may be split between conservation equations, thermochemistry and transport fluxes, are presented as well as typical simplifications often encountered in the literature. The hyperbolic-parabolic structure of the resulting system of partial differential equations is analyzed using symmetrizing variables. The Cauchy problem is discussed for the full system derived from the kinetic theory of gases as well as relaxation towards chemical equilibrium fluids in the fast chemistry limit. The situations of traveling waves and reaction-diffusion systems is also addressed. (10.1007/978-3-319-10151-4_73-1)
  DOI : 10.1007/978-3-319-10151-4_73-1
• Avis en réponse à la saisine HCB - dossier 2014-123. Paris, le 27 juin 2018
  
  • Comité Scientifique Du Haut Conseil Des Biotechnologies .
  • Angevin Frédérique
  • Bagnis Claude
  • Bar-Hen Avner
  • Barny Marie-Anne
  • Boireau Pascal
  • Brévault Thierry
  • Chauvel Bruno B.
  • Collonnier Cécile
  • Couvet Denis
  • Dassa Elie
  • de Verneuil Hubert
  • Demeneix Barbara
  • Franche Claudine
  • Guerche Philippe
  • Guillemain Joël
  • Hernandez Raquet Guillermina
  • Khalife Jamal
  • Klonjkowski Bernard
  • Lavielle Marc
  • Le Corre Valérie
  • Lefèvre François
  • Lemaire Olivier
  • Lereclus Didier D.
  • Maximilien Rémy
  • Meurs Eliane
  • Naffakh Nadia
  • Négre Didier
  • Noyer Jean-Louis
  • Ochatt Sergio
  • Pages Jean-Christophe
  • Raynaud Xavier
  • Regnault-Roger Catherine
  • Renard Michel M.
  • Renault Tristan
  • Saindrenan Patrick
  • Simonet Pascal
  • Troadec Marie-Bérengère
  • Vaissière Bernard
  • Vilotte Jean-Luc
  , 2018.
• Rapid discrimination and quantification analysis of five antineoplastic drugs in aqueous solutions using Raman spectroscopy
  
  • Lê Laetitia Minh Mai
  • Berge Marion
  • Tfayli Ali
  • Zhou Jiangyan
  • Prognon Patrice
  • Baillet-Guffroy Arlette
  • Caudron Eric
  European Journal of Pharmaceutical Sciences, Elsevier, 2018, 111, pp.158-166. (10.1016/j.ejps.2017.09.046)
  DOI : 10.1016/j.ejps.2017.09.046
• Where does the droplet size distribution come from?
  
  • Canu Romain
  • Puggelli Stefano
  • Essadki Mohammed
  • Duret Benjamin
  • Menard Thibaut
  • Massot Marc
  • Reveillon Julien
  • Demoulin F.X.
  International Journal of Multiphase Flow, Elsevier, 2018, 107, pp.230-245. This study employs DNS of two-phase flows to enhance primary atomization understanding and modeling to be used in numerical simulation in RANS or LES framework. In particular, the work has been aimed at improving the information on the liquid-gas interface evolution for modeling approaches, such as the Eulerian-Lagrangian Spray Atomization (ELSA) framework. Even though this approach has been already successfully employed to describe the complete liquid atomization process from the primary region to the dilute spray, improvements are still expected on the derivation of the drop size distribution (DSD). The main aim of the present work is the introduction of a new framework to achieve a continuous description of the DSD formation during the atomization process. The attention is here focused on the extraction from DNS data of the behavior of geometrical variable of the liquid-gas interface, such as the mean (H) and Gauss (G) surface curvatures. The use of a Surface Curvature Distribution is also proposed and studied. A Rayleigh-Plateau instability along a column of liquid and a droplet collision case are first of all considered to analyze and to verify the capabilities of the code to correctly predicting the curvature distributions. A statistical analysis based on the curvatures data, in terms of probability density function, is presented in order to determine the physical parameters that control the curvatures on this test case. Then, the same formulation is applied in the analysis of the two phase Homogeneous Isotropic Turbulence (HIT) configuration to study how the curvatures evolve all along the atomization process. Joint PDFs are used to illustrate the topological changes of the interface when increasing the liquid volume fraction. (10.1016/j.ijmultiphaseflow.2018.06.010)
  DOI : 10.1016/j.ijmultiphaseflow.2018.06.010
• Pharmacometrics Models with Hidden Markovian Dynamics
  
  • Lavielle Marc
  Journal of Pharmacokinetics and Pharmacodynamics, Springer Verlag, 2018, 45 (1), pp.91--105. The aim of this paper is to provide an overview of pharmacometric models that involve some latent process with Markovian dynamics. Such models include hidden Markov models which may be useful for describing the dynamics of a disease state that jumps from one state to another at discrete times. On the contrary, diffusion models are continuous-time and continuous-state Markov models that are relevant for modelling non observed phenomena that fluctuate continuously and randomly over time. We show that an extension of these models to mixed effects models is straightforward in a population context. We then show how the Forward-Backward algorithm used for inference in hidden Markov models and the extended Kalman filter used for inference in diffusion models can be combined with standard inference algorithms in mixed effects models for estimating the parameters of the model. The use of these models is illustrated with two applications: a hidden Markov model for describing the epileptic activity of a large number of patients and a stochastic differential equation based model for describing the pharmacokinetics of theophyllin. (10.1007/s10928-017-9541-1)
  DOI : 10.1007/s10928-017-9541-1
• Impact of the interruption of a large heart failure regional disease management program on hospital admission rate: a population-based study
  
  • Alla François
  • Agrinier Nelly
  • Lavielle Marc
  • Rossignol Patrick
  • Gonthier Damien
  • Boivin Jean-Marc
  • Zannad Faiez
  European Journal of Heart Failure, European Society of Cardiology (Wiley), 2018, 20 (6), pp.1066-1068. (10.1002/ejhf.1193)
  DOI : 10.1002/ejhf.1193
• One-sided convergence in the Boltzmann-Grad limit
  
  • Bodineau Thierry
  • Gallagher Isabelle
  • Saint-Raymond Laure
  • Simonella Sergio
  Annales de la Faculté des Sciences de Toulouse. Mathématiques., Université Paul Sabatier _ Cellule Mathdoc, 2018, 27 (5). We review various contributions on the fundamental work of Lanford deriving the Boltzmann equation from hard-sphere dynamics in the low density limit. We focus especially on the assumptions made on the initial data and on how they encode irreversibility. The impossibility to reverse time in the Boltzmann equation (expressed for instance by Boltzmann's H-theorem) is related to the lack of convergence of higher order marginals on some singular sets. Explicit counterexamples single out the microscopic sets where the initial data should converge in order to produce the Boltzmann dynamics. (10.5802/afst.1589)
  DOI : 10.5802/afst.1589
• Characteristic and Universal Tensor Product Kernels
  
  • Szabó Zoltán
  • Sriperumbudur Bharath K
  Journal of Machine Learning Research, Microtome Publishing, 2018, 18, pp.233. Maximum mean discrepancy (MMD), also called energy distance or N-distance in statistics and Hilbert-Schmidt independence criterion (HSIC), specifically distance covariance in statistics, are among the most popular and successful approaches to quantify the difference and independence of random variables, respectively. Thanks to their kernel-based foundations, MMD and HSIC are applicable on a wide variety of domains. Despite their tremendous success, quite little is known about when HSIC characterizes independence and when MMD with tensor product kernel can discriminate probability distributions. In this paper, we answer these questions by studying various notions of characteristic property of the tensor product kernel.
• Global acoustic daylight imaging in a stratified Earth-like model
  
  • Garnier Josselin
  • de Hoop Maarten V.
  • Sølna Knut
  Inverse Problems, IOP Publishing, 2018, 34 (1). (10.1088/1361-6420/aa9ad7)
  DOI : 10.1088/1361-6420/aa9ad7
• Minimization of the eigenvalues of the Dirichlet-LapIacian with a diameter constraint
  
  • Bogosel B
  • Henrot A
  • Lucardesi I
  SIAM Journal on Mathematical Analysis, Society for Industrial and Applied Mathematics, 2018, 50 (5), pp.5337-5361. In this paper we look for the domains minimizing the h-th eigenvalue of the Dirichlet-Laplacian λ h with a constraint on the diameter. Existence of an optimal domain is easily obtained, and is attained at a constant width body. In the case of a simple eigenvalue, we provide non standard (i.e., non local) optimality conditions. Then we address the question whether or not the disk is an optimal domain in the plane, and we give the precise list of the 17 eigenvalues for which the disk is a local minimum. We conclude by some numerical simulations showing the 20 first optimal domains in the plane. (10.1137/17M1162147)
  DOI : 10.1137/17M1162147
• Inverse scattering for the Bethe-Peierls model
  
  • Novikov Roman
  Eurasian Journal of Mathematical and Computer Applications, Eurasian National University, Kazakhstan (Nur-Sultan), 2018, 6 (1), pp.52-55. We consider the phased and phaseless inverse scattering problems for the Bethe-Peierls model. We give complete solutions of these problems including questions of uniqueness, nonuniqueness, reconstruction and characterization.
• Laser Beam Imaging from the Speckle Pattern of the Off-Axis Scattered Intensity
  
  • Borcea Liliana
  • Garnier Josselin
  SIAM Journal on Applied Mathematics, Society for Industrial and Applied Mathematics, 2018, 78 (2), pp.677-704. (10.1137/17M1139059)
  DOI : 10.1137/17M1139059